The CASP blind trials (Critical Assessment of techniques for protein Structure Prediction) assess the accuracy of protein prediction that includes evaluation of comparative model building of protein structures. Comparative models of four proteins (T0001, T0003, T0017, and T0028) for CASP2 (held duri
Multivariate phase combination improves automated crystallographic model building
✍ Scribed by Skubák, Pavol ;Waterreus, Willem-Jan ;Pannu, Navraj S.
- Book ID
- 104478550
- Publisher
- International Union of Crystallography
- Year
- 2010
- Tongue
- English
- Weight
- 428 KB
- Volume
- 66
- Category
- Article
- ISSN
- 0907-4449
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✦ Synopsis
Density modification is a standard technique in macromolecular crystallography that can significantly improve an initial electron-density map. To obtain optimal results, the initial and density-modified map are combined. Current methods assume that these two maps are independent and propagate the initial map information and its accuracy indirectly through previously determined coefficients. A multivariate equation has been derived that no longer assumes independence between the initial and density-modified map, considers the observed diffraction data directly and refines the errors that can occur in a single-wavelength anomalous diffraction experiment. The equation has been implemented and tested on over 100 real data sets. The results are dramatic: the method provides significantly improved maps over the current state of the art and leads to many more structures being built automatically.
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