Molecular dynamics simulation of a poly(oxyethylene) chain dissolved in benzene
✍ Scribed by M. Depner; B.L. Schürmann
- Publisher
- John Wiley and Sons
- Year
- 1992
- Tongue
- English
- Weight
- 598 KB
- Volume
- 13
- Category
- Article
- ISSN
- 0192-8651
No coin nor oath required. For personal study only.
✦ Synopsis
Molecular dynamics simulations of pure benzene and a poly(oxyethy1ene) chain in benzene are performed. The simulation of pure benzene is found to agree excellently with previous simulations despite using a different force field. A comparison is made between the results of simulations of the poly(oxyethy1ene) chain in benzene and in water and of stochastic simulations with respect to mean torsional angles, translgauche fractions, and transition rates. Characteristic deviations are found for the simulation in water and explained by specific atomic interactions, while there is satisfactory agreement with a stochastic simulation based upon the simple Langevin equation using a friction coefficient of 1 ps-I. The characteristic ratio of poly(oxyethy1ene) in benzene is calculated on the basis of the rotational isomeric state model.
📜 SIMILAR VOLUMES
This article describes the collisional dynamics (CD) method adapted for molecules with geometrical constraints within a description using Cartesian coordinates for the atoms. In the CD method, stochastic collisions with virtual particles are included in usual molecular dynamics simulations to couple
## Abstract **Summary:** Solid‐state ^2^H NMR spectroscopy was used to examine the chain dynamics of perdeuterated poly(oxyethylene) (d‐POE) inside __α__‐cyclodextrin (__α__‐CD) nanotubes. The nanotubes were prepared by aqueous self‐assembly of __α__‐CD onto either low‐molecular‐weight (1.5 kg/mol)
The conformational behavior of cellobiose was studied by molecular dynamics simulation in a periodic box of waters. Several different initial conformations were used and the results compared with equivalent vacuum simulations. The average positions and rms fluctuations within single torsional confor
Gramicidin A (gA) is prototypical peptide antibiotic and a model ion channel former. Configured in the solid-state NMR beta(6.5)-helix channel conformation, gA was subjected to 1-ns molecular dynamics (MD) gas phase simulations using the all-atom charmm22 force field to ascertain the conformational