We investigated the binding properties of the metalloprotease inhibitors hydroxamate, methanethiolate, and methylphosphoramidate to a model coordination site occurring in several Zn2؉ metalloproteases, including thermolysin. This was carried out using both the SIBFA (sum of interactions between frag
Modeling ?-lactam interactions in aqueous solution through combined quantum mechanics-molecular mechanics methods
✍ Scribed by Pitarch, Jes�s; Pascual-Ahuir, Juan-Luis; Silla, Estanislao; Tu��n, I�aki; Ruiz-L�pez, Manuel F.
- Publisher
- John Wiley and Sons
- Year
- 1999
- Tongue
- English
- Weight
- 281 KB
- Volume
- 20
- Category
- Article
- ISSN
- 0192-8651
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✦ Synopsis
In this article, we have carried out a series of theoretical computations intended to analyze the interactions of -lactam compounds in aqueous solution. The final aim is to rationalize the influence of the medium on -lactam antibiotics reactivity. In particular, the hydrolysis reaction has been studied because of the considerable interest due to its relationship with resistance mechanisms developed by bacteria. The study is extended to the simplest -lactam molecule, propiolactam or 2-azetidinone, and to the corresponding Ž hydroxylated complex resulting from the addition of a hydroxyl anion to the . carbonyl group that plays a crucial role in hydrolysis processes. Molecular Dynamics simulations have been carried out using a hybrid quantum mechanics᎐molecular mechanics potential: the solute is described using the density functional theory, whereas water solvent molecules are treated classically. This represents a sophisticated computational level which, compared to usual force-field simulations, has the advantage of allowing a detailed analysis of solute's electronic properties. The discussion of results is focused on the role played by solute᎐solvent hydrogen bonds and solvent fluctuations on solute's structure.
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