The motion of a chymotrypsin-like serine protease, SGPA, has been studied by torsion space normal mode analysis and by Cartesian space molecular dynamics, and the results have been compared. The molecular dynamics trajectory was analyzed using digital signal processing techniques to provide a set of
✦ LIBER ✦
Low frequency motions in phosphoglycerate kinase. A normal mode analysis
✍ Scribed by Christophe Guilbert; Frédéric Pecorari; David Perahia; Liliane Mouawad
- Book ID
- 107943009
- Publisher
- Elsevier Science
- Year
- 1996
- Tongue
- English
- Weight
- 898 KB
- Volume
- 204
- Category
- Article
- ISSN
- 0301-0104
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Model-free methods are introduced to determine quantities pertaining to protein domain motions from normal mode analyses and molecular dynamics simulations. For the normal mode analysis, the methods are based on the assumption that in low frequency modes, domain motions can be well approximated by m