Limitations of Induced Folding in Molecular Recognition by Intrinsically Disordered Proteins
✍ Scribed by Eszter Hazy; Peter Tompa
- Publisher
- John Wiley and Sons
- Year
- 2009
- Tongue
- English
- Weight
- 212 KB
- Volume
- 10
- Category
- Article
- ISSN
- 1439-4235
No coin nor oath required. For personal study only.
✦ Synopsis
Abstract
Intrinsically disordered proteins exist and function without well‐defined three‐dimensional structures and are common in proteomes where they carry out essential functions. Herein, evidence for their lack of structure and the major functional benefits that this confers, are surveyed. An example is Tβ4, a sequence that is disordered until it binds to G‐actin, when it adopts an ordered conformation (see picture).magnified image
Intrinsically disordered proteins (IDPs) exist and function without well‐defined three‐dimensional structures, thus they defy the classical structure–function paradigm. These proteins are common in proteomes, and they carry out essential functions often related to signalling and regulation of transcription. Herein, the experimental evidence for their lack of structure and the major functional benefits that structural disorder confers, are surveyed. It is shown that IDPs often function by molecular recognition, in which either short motifs, or domain‐sized disordered segments are used for partner recognition. In both cases, the binding segment undergoes induced folding and it attains an ordered structure. This folding‐upon‐binding scenario suggests that the function of IDPs can be interpreted in terms of the static structural view of the classical paradigm. New developments in the field, however, suggest that folding upon binding is limited, and many IDPs preserve a significant level of disorder in the bound state, a phenomenon termed fuzziness. In addition, IDPs may structurally adapt to different partners with different functional outcomes, resulting in promiscuity in function termed moonlighting. It is suggested that a new model describing the structure–function relationship of IDPs has to encompass such structural and functional promiscuity inherent in the disordered state of IDPs.
📜 SIMILAR VOLUMES
## Abstract Virologic failure during treatment with raltegravir, the first effective drug targeting HIV integrase, is associated with two exclusive pathways involving either Q148H/R/K, G140S/A or N155H mutations. We carried out a detailed analysis of the molecular and structural effects of these mu
## Abstract Chicken liver bile acid binding protein (cL‐BABP) crystallizes with water molecules in its binding site. To obtain insights on the role of internal water, we performed two 100 ns molecular dynamics (MD) simulations in explicit solvent for cL‐BABP, as __apo__ form and as a complex with t
KAWATA, AND YUJI MATSUZAWA lipid compositions in patients treated with IFN-a. [3][4][5] Recently, The effect of recombinant interferon alpha 2a (rIFNchronic viral hepatitis C has been accepted as an appropriate a 2a ) on serum lipoprotein metabolism was assessed in indication for IFN-a 2a 6 ; howeve