✦ LIBER ✦

Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS

✍ Scribed by Grindon, Christina (author);Harris, Sarah (author);Evans, Tom (author);Novik, Keir (author);Coveney, Peter (author);Laughton, Charles (author)

Book ID: 121756874
Publisher: Royal Society
Year: 2004
Tongue: English
Weight: 750 KB
Volume: 362
Category: Article
ISSN: 0264-3952
DOI: 10.1098/rsta.2004.1381

No coin nor oath required. For personal study only.

📜 SIMILAR VOLUMES

Large-scale molecular dynamics simulatio

Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS

✍ Grindon, Christina (author);Harris, Sarah (author);Evans, Tom (author);Novik, Ke 📂 Article 📅 2004 🏛 Royal Society 🌐 English ⚖ 750 KB

Validation of Molecular Dynamics Simulat

Validation of Molecular Dynamics Simulations of Biomolecules Using NMR Spin Relaxation as Benchmarks: Application to the AMBER99SB Force Field

✍ Showalter, Scott A.; Brüschweiler, Rafael 📂 Article 📅 2007 🏛 American Chemical Society 🌐 English ⚖ 375 KB

Molecular dynamics simulation of the pro

Molecular dynamics simulation of the proline conformational equilibrium and dynamics in antamanide using the GROMOS force field

✍ Brunne, R. M.; van Gunsteren, W. F.; Brueschweiler, R.; Ernst, R. R. 📂 Article 📅 1993 🏛 American Chemical Society 🌐 English ⚖ 563 KB

Molecular Dynamics Simulations of DNA wi

Molecular Dynamics Simulations of DNA with Protein's Consistent GROMOS Force Field and the Role of Counterions' Symmetry

✍ Tapia, O.; Velázquez, I. 📂 Article 📅 1997 🏛 American Chemical Society 🌐 English ⚖ 112 KB

Dynamic Formation and Breaking of Disulf

Dynamic Formation and Breaking of Disulfide Bonds in Molecular Dynamics Simulations with the UNRES Force Field

✍ Chinchio, M.; Czaplewski, C.; Liwo, A.; Ołdziej, S.; Scheraga, H. A. 📂 Article 📅 2007 🏛 American Chemical Society 🌐 English ⚖ 607 KB

All-atom empirical force field for nucle

All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution

✍ MacKerell, Alexander D.; Banavali, Nilesh K. 📂 Article 📅 2000 🏛 John Wiley and Sons 🌐 English ⚖ 300 KB 👁 3 views

Molecular dynamics simulations based on empirical force fields can greatly enhance knowledge of DNA and RNA structure and dynamics in solution. Presented are results on simulations of three DNA sequences and one RNA sequence using the new all-atom CHARMM27 force field for nucleic acids presented in