Implementation and use of the method of prudent ascent in conformational analysis using molecular mechanics

✍ Scribed by Rob W. W. Hooft; Jan A. Kanters; Jan Kroon

• Publisher: John Wiley and Sons
• Year: 1991
• Tongue: English
• Weight: 404 KB
• Volume: 12
• Category: Article
• ISSN: 0192-8651
• DOI: 10.1002/jcc.540120806

✦ Synopsis

Abstract

In two‐dimensional conformational analysis the current practice is to perform an energy minimization for all possible combinations of two dihedral angles in the molecule, in a fixed order, and apply a certain dihedral angle step‐size. A newly developed method is presented in which the order of the evaluation points on the energy‐surface is not fixed, but is dependent on all previous results in a way which we call “the method of prudent ascent.” In this method the most promising calculation is carried out first, thus minimizing the risk of atomic collisions. In order to be able to take care of the many additional degrees of conformational freedom present in, e.g., carbohydrate molecules, all minimizations are performed using a set of different promising starting conformations on the basis of previous calculations, and only the lowest energy result for each point is saved. An application of the method to conformational analysis of methyl‐cellobiose and the artificial sweetener trichlorogalactosucrose is also presented.