Integrating FPGA acceleration into HMMer
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Tim Oliver; Leow Yuan Yeow; Bertil Schmidt
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Article
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2008
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Elsevier Science
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English
β 400 KB
HMMer is a commonly used package for biological sequence database searching with profile hidden Markov model (HMMs). It allows researchers to compare HMMs to sequence databases or sequences to HMM databases. However, such searches often take many hours on traditional computer architectures. These ru