Facile transition between 310- and α-helix: Structures of 8-, 9-, and 10-residue peptides containing the -(Leu-Aib-Ala)2-Phe-Aib-fragment
✍ Scribed by Isabella L. Karle; Judith L. Flippen-Anderson; R. Gurunath; P. Balaram
- Publisher
- Cold Spring Harbor Laboratory Press
- Year
- 1994
- Tongue
- English
- Weight
- 730 KB
- Volume
- 3
- Category
- Article
- ISSN
- 0961-8368
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✦ Synopsis
Abstract
A structural transition from a 3~10~‐helix to an α‐helix has been characterized at high resolution for an octapeptide segment located in 3 different sequences. Three synthetic peptides, decapeptide (A) Boc‐Aib‐Trp‐(Leu‐Aib‐Ala)~2~‐Phe‐Aib‐OMe, nonapeptide (B) Boc‐Trp‐(Leu‐Aib‐Ala)~2~‐Phe‐Aib‐OMe, and octapeptide (C) Boc‐(Leu‐Aib‐Ala)~2~‐Phe‐Aib‐OMe, are completely helical in their respective crystals. At 0.9 Å resolution, R factors for A, B, and C are 8.3%, 5.4%, and 7.3%, respectively. The octapeptide and nonapeptide form ideal 3~10~‐helices with average torsional angles ϕ(N‐C^α^) and Ψ(C^α^–C') of –57°, –26° for C and –60°, –27° for B. The 10‐residue peptide (A) begins as a 3~10~‐helix and abruptly changes to an α‐helix at carbonyl O(3), which is the acceptor for both a 4 → 1 hydrogen bond with N(6)H and a 5 → 1 hydrogen with N(7)H, even though the last 8 residues have the same sequence in all 3 peptides. The average ϕ, Ψ angles in the decapeptide are –58°, –28° for residues 1–3 and –63°, –41 ° for residues 4–10. The packing of helices in the crystals does not provide any obvious reason for the transition in helix type. Fourier transform infrared studies in the solid state also provide evidence for a 3~10~‐ to α‐helix transition with the amide I band appearing at 1,656–1,657 cm^−1^ in the 9‐ and 10‐residue peptides, whereas in shorter sequences the band is observed at 1,667 cm^−1^.