𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Evolutionary algorithms in the optimization of dynamic molecular alignment

✍ Scribed by Ch. Siedschlag; O.M. Shir; Th. Bäck; M.J.J. Vrakking

Publisher
Elsevier Science
Year
2006
Tongue
English
Weight
373 KB
Volume
264
Category
Article
ISSN
0030-4018

No coin nor oath required. For personal study only.

📜 SIMILAR VOLUMES

Automatic Discovery of Sub-molecular Seq
Automatic Discovery of Sub-molecular Sequence Domains in Multi-aligned Sequences: A Dynamic Programming Algorithm for Multiple Alignment Segmentation
✍ ERIC POE XING; DENISE M. WOLF; INNA DUBCHAK; SYLVIA SPENGLER; MANFRED ZORN; ILYA 📂 Article 📅 2001 🏛 Elsevier Science 🌐 English ⚖ 446 KB

Automatic identi"cation of sub-structures in multi-aligned sequences is of great importance for e!ective and objective structural/functional domain annotation, phylogenetic treeing and other molecular analyses. We present a segmentation algorithm that optimally partitions a given multi-alignment int

A Fast Algorithm for the Optimal Alignme
A Fast Algorithm for the Optimal Alignment of Three Strings
✍ Lloyd Allison 📂 Article 📅 1993 🏛 Elsevier Science 🌐 English ⚖ 272 KB

LLOYD ALLISON Department of Computer Science, Monash University, Australia 3168 (Received on 15 December 1992, Accepted in revised form on 10 March 1993) Ukkonen's (pair-wise) string alignment technique is extended to the problem of finding an optimal alignment for three strings. The resulting alg

An Optimized Algorithm for Molecular Dyn
An Optimized Algorithm for Molecular Dynamics Simulation of Large-Scale Systems
✍ E. Glikman; I. Kelson; N.V. Doan; H. Tietze 📂 Article 📅 1996 🏛 Elsevier Science 🌐 English ⚖ 272 KB

tasks, which results in considerable CPU time savings. This method is based on selectively limiting the calculation of A method of optimizing molecular dynamics calculations is presented. The method employs multiple time steps across the computhe forces and the neighbor list updating, according to t

Alignment of molecules by the Monte Carl
Alignment of molecules by the Monte Carlo optimization of molecular similarity indices
✍ Parretti, Martin F.; Kroemer, Romano T.; Rothman, Jeffrey H.; Richards, W. Graha 📂 Article 📅 1997 🏛 John Wiley and Sons 🌐 English ⚖ 261 KB 👁 1 views

3D-QSAR uses statistical techniques to correlate calculated structural properties with target properties like biological activity. The comparison of calculated structural properties is dependent upon the relative orientations of molecules in a given data set. Typically molecules are aligned by perfo