DNA COMPUTING AND MOLECULAR PROGRAMMING : 23rd international conference, dna

• Publisher: SPRINGER INTERNATIONAL PU
• Year: 2017
• Tongue: English
• Leaves: 278
• Category: Library

✦ Synopsis

This book constitutes the refereed proceedings of the 23th International Conference on DNA Computing and Molecular Programming, DNA 23, held Austin, TX, USA, in September 2017. The 16 full papers presented were carefully selected from 23 submissions. Research in DNA computing aims to draw together mathematics, computerscience, physics, chemistry, biology, and nanotechnology to address the analysis, design, and synthesis of information-based molecular systems. The papers address all areas related to biomolecular computing such as: algorithms and models for computation with biomolecular systems; computational processes in vitro and in vivo; molecular motors and molecular robotics; studies of fault-tolerance and error correction; software tools for analysis, simulation, and design; synthetic biology and in vitro evolution; applications in engineering, physics, chemistry, biology, and medicine.

✦ Table of Contents

Front Matter ....Pages I-XII
Automated, Constraint-Based Analysis of Tethered DNA Nanostructures (Matthew R. Lakin, Andrew Phillips)....Pages 1-16
DNA-Templated Synthesis Optimization (Bjarke N. Hansen, Kim S. Larsen, Daniel Merkle, Alexei Mihalchuk)....Pages 17-32
Ruleset Optimization on Isomorphic Oritatami Systems (Yo-Sub Han, Hwee Kim)....Pages 33-45
Unknotted Strand Routings of Triangulated Meshes (Abdulmelik Mohammed, Mustafa Hajij)....Pages 46-63
The Design Space of Strand Displacement Cascades with Toehold-Size Clamps (Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik)....Pages 64-81
A Stochastic Molecular Scheme for an Artificial Cell to Infer Its Environment from Partial Observations (Muppirala Viswa Virinchi, Abhishek Behera, Manoj Gopalkrishnan)....Pages 82-97
Complexities for High-Temperature Two-Handed Tile Self-assembly (Robert Schweller, Andrew Winslow, Tim Wylie)....Pages 98-109
A DNA Neural Network Constructed from Molecular Variable Gain Amplifiers (Sherry Xi Chen, Georg Seelig)....Pages 110-121
A Stochastic Approach to Shortcut Bridging in Programmable Matter (Marta Andrés Arroyo, Sarah Cannon, Joshua J. Daymude, Dana Randall, Andréa W. Richa)....Pages 122-138
A Minimal Requirement for Self-assembly of Lines in Polylogarithmic Time (Yen-Ru Chin, Jui-Ting Tsai, Ho-Lin Chen)....Pages 139-154
Robust Detection in Leak-Prone Population Protocols (Dan Alistarh, Bartłomiej Dudek, Adrian Kosowski, David Soloveichik, Przemysław Uznański)....Pages 155-171
Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates (Sedigheh Zolaktaf, Frits Dannenberg, Xander Rudelis, Anne Condon, Joseph M. Schaeffer, Mark Schmidt et al.)....Pages 172-187
Simplifying Analyses of Chemical Reaction Networks for Approximate Majority (Anne Condon, Monir Hajiaghayi, David Kirkpatrick, Ján Maňuch)....Pages 188-209
Chemical Boltzmann Machines (William Poole, Andrés Ortiz-Muñoz, Abhishek Behera, Nick S. Jones, Thomas E. Ouldridge, Erik Winfree et al.)....Pages 210-231
A General-Purpose CRN-to-DSD Compiler with Formal Verification, Optimization, and Simulation Capabilities (Stefan Badelt, Seung Woo Shin, Robert F. Johnson, Qing Dong, Chris Thachuk, Erik Winfree)....Pages 232-248
Thermodynamic Binding Networks (David Doty, Trent A. Rogers, David Soloveichik, Chris Thachuk, Damien Woods)....Pages 249-266
Back Matter ....Pages 267-267

✦ Subjects

Computer science;Data structures (Computer science);Computers;Algorithms;Computer science -- Mathematics;Data structures (Computer science)