Distribution of conformational energy minima in model heteropolymers
โ Scribed by Gustavo A. Arteca
- Publisher
- Elsevier Science
- Year
- 1995
- Tongue
- English
- Weight
- 506 KB
- Volume
- 244
- Category
- Article
- ISSN
- 0009-2614
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โฆ Synopsis
As an approach to explain the distribution of conformational minima in medium-size polymers and oligopeptides, we derive the exact density of states of a rotational-isomeric model of a heteropolymer. The model considers a finite molecular chain with a variable number of torsions, each of which may give rise to a different number of rotamers and conformational energies. The density of states is computed from combinatorial generating functions and then compared with that of homopolymers. By using a statistical approach of 'mixed chains', we build effective distributions of minima that exhibit the same qualitative features found in realistic conformational analyses.
๐ SIMILAR VOLUMES
We have investigated energy landscape of human lysozyme in its native state by using principal component analysis and a model, jumping-among-minima (JAM) model. These analyses are applied to 1 nsec molecular dynamics trajectory of the protein in water. An assumption embodied in the JAM model allows