Development of the reaction time accelerating molecular dynamics method for simulation of chemical reaction
β Scribed by Hiromitsu Takaba; Shigekazu Hayashi; Huifeng Zhong; Hema Malani; Ai Suzuki; Riadh Sahnoun; Michihisa Koyama; Hideyuki Tsuboi; Nozomu Hatakeyama; Akira Endou; Momoji Kubo; Carlos A. Del Carrpio; Akira Miyamoto
- Publisher
- Elsevier Science
- Year
- 2008
- Tongue
- English
- Weight
- 460 KB
- Volume
- 254
- Category
- Article
- ISSN
- 0169-4332
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## Abstract Fragment Molecular Orbital basedβMolecular Dynamics (FMOβMD, Komeiji et al., Chem Phys Lett 2003, 372, 342) is an __ab initio__ MD method suitable for large molecular systems. Here, FMOβMD was implemented to conduct full quantum simulations of chemical reactions in explicit solvation. S
computer. The force is calculated with sufficient accuracy for practical MD simulations. The processor also calculates virials simultaneously with forces for use in the calculation of pressure, accommodates periodic boundary conditions, and can be used in Ewald summations. An MD Engine system consis