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Development of distributed bioinformatics applications with GMP

✍ Scribed by Bertil Schmidt; Lin Feng; Amey Laud; Yusdi Santoso

Publisher
John Wiley and Sons
Year
2004
Tongue
English
Weight
234 KB
Volume
16
Category
Article
ISSN
1532-0626

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✦ Synopsis

Abstract

We present the design and use of gMP as a tool for developing distributed bioinformatics applications. gMP is a purely Java‐based interface that adds MPI‐like message‐passing and collective communication to the genomics Research Network Architecture (gRNA). The gRNA is a highly programmable, modular environment specifically designed to invigorate the development of genome‐centric tools for life science research. We demonstrate the development of a distributed application to detect regulatory elements using correlation with gene expression data. Its implementation with gMP leads to significant runtime savings on our distributed gRNA system. Copyright Β© 2004 John Wiley & Sons, Ltd.

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