Acanthobdella peledina and leeches and branchiobdellidans, formation of monophyletic group of oligochaetes, 21, 346 Acari feather mites of subfamily Avenzoariinae, molecular and morphological data, 20, 124 terrestrial mites, mitochondrial cytochrome oxidase subunit I gene, 18, 47 Acomys dimidiatus ancestral karyotype, from analysis of Acomys minous cytochrome b sequences, 18, 37 Acomys minous cytochrome b sequences: paraphyly and ancestral karyotype of Acomys dimidiatus, 18, 37 Acropora nuclear receptor evolution, 21, 93 Adaptive lineages retrieval in duiker antelope, evidence from mitochondrial DNA and fluorescence in situ hybridization, 20, 409 Adaptive radiation Myotis, 21, 436 Aedes chromosomal evolution based on shared restriction fragment length polymorphisms, 20, 316 resistance to vegetable polyphenols, mapping on a molecular phylogeny, 19, 317 Aeschynanthus hypervariable arm 1 of ITS2 nuclear ribosomal DNA, evolution and alignment, 20, 163 Africa African Phiomorpha-South American Caviomorpha clade of cane rat, 18, 127 pre-Pleistocene radiation of akalats, 18, 74 shrews, 16S rRNA sequences, 20, 185 tilapiine fishes, mitochondrial tRNA Pro gene and control region, 20, 361 Agrobacterium rhizogenes genes of, horizontal transfer, role in Nicotiana evolution, 20, 100 Akalats pre-Pleistocene radiation, analysis based on mtDNA sequences, 18, 74 Alariaceae plasmid-encoded RuBisCo spacer and nuclear-encoded ITS sequence comparisons, 21, 231 Aldolase A intron V nuclear genomic region, variation in spider monkeys, 19, 67 Alectryon evolution and biogeography, 20, 14 Aleochara cytochrome oxidase sequences, 18, 202 Algorithms for constructing local regions in phylogenetic network, 19, 1 Allocebus mitochondrial COIII, ND3, ND4L, ND4, and tRNAs, 19, 45 Allozyme allele frequency data Oeneis chryxus complex, 20, 111 Alpheus major clades inferred from nuclear and mitochondrial DNA, 20, 375 Amaranthus and wild relatives, ITS and AFLP sequences and double-primer fluorescent ISSR markers, 21, 372 amd gene species groups of virilis-repleta radiation of Drosophila, 21, 327 Amphibians Bufo, 16S rRNA variation, 19, 326 Amplified fragment length polymorphism estimate of nucleotide diversity, 18, 143 grain amaranths and their wild relatives, 21, 372 Analgoidea feather mites of subfamily Avenzoariinae, molecular and morphological data, 20, 124 Anatolia rapid branching of highly divergent lineages of Mertensiella luschani, 18, 434 Andes monophyly of Hemispingus tanagers in, mitochondrial DNA evidence, 21, 424 Androgenesis in Bacillus stick insects, analysis based on mitochondrial cytochrome oxidase II gene, 19, 157 Aneides ND4 and tRNA sequences: old and rapid radiation, 18, 174 Anguilla cytochrome b and 12S rRNA genes, 20, 252 cytochrome b and 16S rRNA genes, 20, 450