Abies species Japanese, chloroplast DNA sequences, 16, 271 Acaulospora gerdemannii (fungus) 18S rRNA sequences, 14, 276 Acaulospora trappei (fungus) 18S rRNA sequences, 14, 276 Achatinella (tree snail) Hawaiian, mitochondrial phylogeny, 16, 263 Achatinellinae Hawaiian tree snails, mitochondrial phylogeny, 16, 263 Acheta domestica (field cricket) North American, cytochrome b and 16S rRNA genes, 17, 48 Acipenser (sturgeon) in North America, 12S rRNA, cytochrome c oxidase II, tRNA Asp , and tRNA Phe sequences, 16, 64 Acipenseriformes North American sturgeons, 12S rRNA, cytochrome c oxidase II, tRNA Asp , and tRNA Phe sequences, 16, 64 Acknowledgment reviewers, 17, 462 Acridomorpha basal, morphological character conflicts, resolution with molecular data, 15, 345 Africa mole-rats, nuclear transthyretin gene intron 1, 16, 467 Agamidae Laudakia caucasia from mountains on northern Iranian Plateau, vicariance, 14, 479 Agaricales Amanita, mitochondrial and nuclear rDNA, variation in modes and rates of evolution, 16, 48 Agromyzidae holly leafminers, species limits, speciation, and dietary specialization, 17, 244 Ailurus fulgens (red panda) cytochrome b, 12S and 16S rRNA, and transthyretin intron I, 17, 190 Alcohol dehydrogenase AdhA gene in New World diploid cottons, phylogeny, duplication, and intraspecific variation, 16, 73 Aldolase gene phylogenies in vertebrates, analysis with reconciled trees, 14, 89 Algae lichen-forming, group I intron distribution: facilitation of intron lateral transfer by lichenization, 14, 342 Allium Himalyan species, origin of Milula within, 17, 209 Allozymes Metepeira, geographic variations, 15, 414 and mtDNA, comparison in cryptic Gammarus fossarum types, 15, 260 Amanita (mushroom) mitochondrial and nuclear rDNA, variation in modes and rates of evolution, 16, 48 Amentotaxus chloroplast matK gene and nuclear rDNA ITS region, 14, 353 Amphibia, see also Frogs; Salamander East Asian bufonids, cytochrome b gene and 12S and 16S rRNA, 14, 423 poison frogs, mitochondrial 12S and 16S rRNA gene sequences, 15, 34 Amplified fragment length polymorphism fingerprinting of banana cultivars, 17, 360 Anaspidea mitochondrial cytochrome c oxidase subunit I and 12S and 16S rRNA gene sequences, 15, 41 Andes Muscisaxicola ground-tyrants, COII and ND3 genes, 15, 369 Angiosperms chloroplast ndhF sequences, 16, 96 Anguilla (eel) cytochrome b and 16S rDNA sequences, 14, 250 Annelida Clitellata, phylogenetic resolution, effects of rapid evolution of lineages, 15, 355 Tubificidae, 18S rDNA sequences, 15, 381 Anopheles punctulatus group rDNA sequence alignments from mitochondrial and nuclear small ribosomal subunits, 17, 430 Anostracan crustaceans cytochrome oxidase I and 16S and 28S D1-D3 rDNA gene regions, 17, 117 Anthemideae chloroplast gene ndhF, phylogeny and biogeography, 15, 59 Ants Dolichoderinae, cytochrome oxidase II and III, cytochrome b, and tRNA UUR Leu genes, 17, 108 Anura East Asian bufonids, cytochrome b gene and 12S and 16S rRNA, 14, 423 Limnodynastes, 16S rRNA and ND4 genes, 16, 379 Apalone spp. (turtle) cytochrome b sequences: implications for regional and wide-scale historical evolutionary forces, 14, 152 Aphidiinae 18S rRNA sequences, 14, 180 Aphids Lachnidae, elongation factor 1␣ and cytochrome oxidase 2 sequences, 14, 131 Aphnaeini Chrysoritis, phylogeny and life history evolution inferred from mitochondrial cytochrome oxidase I sequences, 17, 85 Apidae carpenter bees, cytochrome oxidase 1 and cytochrome b genes, 17, 407 Apodiformes cytochrome b and 12S rRNA sequences, 14, 20 Apolipoprotein(a) protease and kringle domains, modes of evolution, 14, 469 Apomictic species origins of polyploidy in, analysis with molecular markers, 14, 232