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A Abramis Greek, mitochondrial cytochrome b gene, 13, 122 Acantholatris mitochondrial cytochrome b and D-loop sequences, implications for taxonomy and biogeography, 13, 93 Acantholingua ohridana growth hormone intron sequences: inclusion within Salmo, 11, 381 Acanthuroidei 12S and 16S mtDNA gene fragment sequences and morphology, 11, 415 Acari hard ticks, 18S rRNA: paraphyletic character of Aponomma, 11, 288 Aceras ITS DNA variation: morphological gaps and molecular continuity, 13, 67 Acomyinae as sister group of Murinae ϩ Gerbillinae clade, evidence from nuclear ribonuclease gene, 13, 181 Acrocephalus (warbler) Palearctic-African, mitochondrial cytochrome b nucleotide sequences, 11, 246 Actiniaria taxonomy in Anthoza, analysis based on nuclear 18S rDNA sequences, 13, 417 Actinorhizal plants rbcL sequences, phylogenetic trees from, comparison with Frankia phylogenetic trees from 16S rDNA, 13, 493 Adaptive evolution ruminant stomach lysozyme genes, 13, 474 Africa Acrocephalus and Hippolais warblers, mitochondrial cytochrome b nucleotide sequences, 11, 246 aplocheiloid killifishes, mitochondrial cytochrome b and 12S rRNA genes Aphyosemion and Fundulopanchax, 11, 351 West African killifishes, 11, 343 fruitbats, phylogeography, 13, 596 Agaricaceae mushrooms, large subunit rRNA, 13, 1 Ailuropoda melanoleuca (giant panda) rapid radiation events indicated by likelihood phylogenetic estimation from multiple mtDNA fragments, 13, 82 Alcelaphini cytochrome b phylogeny, 12, 31 Alcohol dehydrogenase gene sequences, Drosophila and related genera, conflict with anatomical data, 13, 319 Allele size constraints on, detection with single-locus tests of microsatellite evolution, 11, 477 Allosyncarpia ITS sequence data, 12, 215 Alouatta belzebul (monkey) ␥-globin gene sequences, 12, 10 Alouatta caraya (monkey) ␥-globin gene sequences, 12, 10 Alouatta seniculus (monkey) ␥-globin gene sequences, 12, 10 Alu repeats tarsier, comparison with strepsirhine prosimians and human, 11, 77 American black bear rapid radiation events indicated by likelihood phylogenetic estimation from multiple mtDNA fragments, 13, 82 Amino acid sequence Delta/Serrate/LAG-2 proteins, 11, 308 type 1 serine/threonine protein phosphatases, 12, 57 Amino acid substitution rate variation among sites, implications for universal phylogenies deduced from rRNA and protein-coding genes, 13, 159 Amphibians bufonids and other frogs, 12S rDNA, control region, cytochrome oxidase I, and cytochrome b, PCR primers and amplification methods for, 11, 163 Anacamptis ITS DNA variation: morphological gaps and molecular continuity, 13, 67 Anairetes (tit-tyrant) cytochrome b and NADH dehydrogenase subunit 2 mtDNA sequences, 11, 67 Anatomy Drosophila and related genera, conflict with molecular data, 13, 319 Andes Cranioleuca spinetails, rapid diversification, 12, 273 tit-tyrants, cytochrome b and NADH dehydrogenase subunit 2 mtDNA sequences, 11, 67 Angiosperms Podostemaceae, 18S rDNA and rbcL sequence data, 11, 261 Angophora ITS sequence data, 12, 215 Anguidae molecular phylogenetics, tRNA evolution, and historical biogeography, 12, 250 Anguimorpha anguid lizards and related taxonomic families, molecular phylogenetics, tRNA evolution, and historical biogeography, 12, 250 Annelida leeches, higher-level relationships based on morphology and gene sequences, 12, 350 Anniellidae molecular phylogenetics, tRNA evolution, and historical biogeography, 12, 250 Antelopes cytochrome b phylogeny, 12, 31 Anthozoa subclass-level and ordinal-level organization, analysis based on nuclear 18S rDNA sequences, 13, 417 Anthus mitochondrial cytochrome b gene sequences, 11, 84 Antilopinae mitochondrial cytochrome b and cytochrome c oxidase III gene sequences, 12, 87 Antilopini cytochrome b phylogeny, 12, 31
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