## Abstract Various quantum mechanical/molecular mechanical (QM/MM) geometry optimizations starting from an x‐ray crystal structure and from the snapshot structures of constrained molecular dynamics (MD) simulations have been performed to characterize two dynamically stable active site structures o
Cuii in Liquid Ammonia: An Approach by Hybrid Quantum-Mechanical/Molecular-Mechanical Molecular Dynamics Simulation
✍ Scribed by Christian F. Schwenk; Bernd M. Rode
- Publisher
- John Wiley and Sons
- Year
- 2004
- Tongue
- English
- Weight
- 170 KB
- Volume
- 5
- Category
- Article
- ISSN
- 1439-4235
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✦ Synopsis
Abstract
To investigate the solvation structure of the Cu^ii^ ion in liquid ammonia, ab initio quantum‐mechanical/molecular‐mechanical (QM/MM) molecular dynamics (MD) simulations were carried out at Hartree Fock (HF) and hybrid density functional theory (B3 LYP) levels. A sixfold‐coordinated species was found to be predominant in the HF case whereas five‐ and sixfold‐coordinated complexes were obtained in a ratio 2:1 from the B3 LYP simulation. In contrast to hydrated Cu^ii^, which exhibits a typical Jahn–Teller distortion, the geometrical arrangement of ligand molecules in the case of ammonia can be described as a [2+4] ([2+3]) configuration with 4 (3) elongated copper–nitrogen bonds. First shell solvent exchange reactions at picosecond rate took place in both HF and B3 LYP simulations, again in contrast to the more stable sixfold‐coordinated hydrate. NH~3~ ligands apparently lead to strongly accelerated dynamics of the Cu^ii^ solvate due to the “inverse” [2+4] structure with its larger number of elongated copper–ligand bonds. Several dynamical properties, such as mean ligand residence times or ion–ligand stretching frequencies, prove the high lability of the solvated complex.
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## Abstract The Cu^II^ hydration shell structure has been studied by means of classical molecular dynamics (MD) simulations including three‐body corrections and hybrid quantum‐mechanical/molecular‐mechanical (QM/MM) molecular dynamics (MD) simulations at the Hartree–Fock level. The copper(II) ion i
## Abstract We have explored the impact of a number of basic simulation parameters on the results of a recently developed hybrid molecular dynamics‐quantum mechanics (MD‐QM) method (Mercer et al., J Phys Chem B 1999, 103, 7720). The method utilizes MD simulations to explore the ground‐state configu