𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Conformational solution studies of neuropeptide γ using CD and NMR spectroscopy

✍ Scribed by Sylwia Rodziewicz-Motowidło; Krzysztof Brzozowski; Anna Łęgowska; Adam Liwo; Jerzy Silbering; Marek Smoluch; Krzysztof Rolka


Publisher
John Wiley and Sons
Year
2002
Tongue
English
Weight
545 KB
Volume
8
Category
Article
ISSN
1075-2617

No coin nor oath required. For personal study only.

✦ Synopsis


Neuropeptide gamma is one of the largest members of the tachykinin family of peptides, exhibiting strong agonistic activity towards the NK-2 tachykinin receptor. This peptide was synthesized by the solid-phase method using the Fmoc chemistry. Circular-dichroism spectroscopy (CD) investigations of this peptide were performed in phosphate buffer, in the presence of sodium dodecylsulphate (SDS) micelles and trifluoroethanol (TFE) solutions and in DMSO-d6 using the 2D NMR technique in conjunction with two different theoretical approaches. The first assumes multiconformational equilibrium of the peptide studied characterized by the values of statistical weights of low-energy conformations. These calculations were performed using three different force fields ECEPP/3, AMBER4.1 and CHARMM (implemented in the X-PLOR program). The second method incorporates interproton distance and dihedral angle constraints into the starting conformation using the Simulated Annealing algorithm (X-PLOR program). The CD experiments revealed that although the peptide studied is flexible in polar solvents, a tendency to adopt a helical structure was observed in the hydrophobic environment. The NMR data (NOE effects) indicate a helical or reverse structure in the Ile7-His12 fragment of the peptide studied in DMSO-d6 solution. The results obtained cannot be interpreted in terms of a single conformation. Most of the conformations obtained with the ECEPP/3 force field possess a high content of a helical structure. None of the conformers, obtained with the AMBER4.1 and CHARMM force fields, can be considered as the dominant one. In all conformations several beta-turns were detected and in some cases gamma-turns were also found. But in fact, it is rather difficult to select the position of the secondary element(s) present in the structure of NPgamma in solution. All conformers calculated with the X-PLOR program (with using NMR derived distance and torsion angle constraints) are stabilized by several beta-turns. Common structural motives are a type IV beta-turn in the Gln6-His12 fragment. All conformations obtained using two approaches adopt very similar turn shapes in the middle region of molecule and a random structure on the N- and C-terminal fragments.


📜 SIMILAR VOLUMES


Conformational properties of the proline
✍ Shao Song Chu; David Vander Velde; David Shobe; Preeti Balse; Michael B. Doughty 📂 Article 📅 1995 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 912 KB

We synthesized porcine neuropeptide Y (pNPY) N-terminalfragments by solid-phase synthesis techniques and analyzed them for solution conformational properties by CD and 'H-nmr spectroscopy. The analogues pNPYI-, and pNPYI-,, displayed CD spectra indicative of random structures and showed no evidence

Conformational studies of alanine-rich p
✍ Katarzyna bagińska; Joanna Makowska; WiesŁaw Wiczk; Franciszek Kasprzykowski; Le 📂 Article 📅 2008 🏛 John Wiley and Sons 🌐 English ⚖ 403 KB

## Abstract The circular dichroism (CD) and Fourier transform infrared (FTIR) methods were applied to the conformational studies of alanine‐rich peptide Ac‐K‐[A]~11~‐KGGY‐NH~2~ (where K is lysine, A is alanine, G is glycine and Y is tyrozyne) in water, methanol (MeOH) and trifluoroethanol (TFE). Th

Conformational solution studies of [Sar7
✍ Sylwia Rodziewicz-Motowidło; Igor Zhukov; Franciszek Kasprzykowski; Zbigniew Grz 📂 Article 📅 2002 🏛 John Wiley and Sons 🌐 English ⚖ 259 KB

## Abstract Solution structures of two analogues of vasopressin with an amino acid sequence of __c__[Mpa^1^‐Tyr^2^‐Phe^3^‐Gln^4^‐Asn^5^‐Cys^6^]‐Xaa^7^‐Arg^8^‐Gly^9^‐NH~2~ (Xaa = Sar [**I**] or MeAla [**II**]) were established using ROE and the ^3^__J__~HNHα~ couplings. Each of the peptides was foun

Conformational solution studies of the a
✍ Wojciech Kamysz; Beata Mickiewicz; Katarzyna Greber; Sylwia Rodziewicz-MotowidŁo 📂 Article 📅 2007 🏛 John Wiley and Sons 🌐 English ⚖ 292 KB

## Abstract Temporin A (TA) is a small, basic and highly hydrophobic peptide, isolated from the skin of the European red frog, __Rana temporaria__. The TA (FLPLIGRVLSGIL‐NH~2~) displays a broad spectrum of anti‐microbial activity against Gram‐positive bacteria and fungi __Candida albicans__. In thi