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Conformation of alloHyp in the Y position in the host–guest peptide with the pro–pro–gly sequence: Implication of the destabilization of (Pro–alloHyp–Gly)10

✍ Scribed by Nattha Jiravanichanun; Norikazu Nishino; Kenji Okuyama


Publisher
Wiley (John Wiley & Sons)
Year
2006
Tongue
English
Weight
292 KB
Volume
81
Category
Article
ISSN
0006-3525

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✦ Synopsis


Abstract

The crystal structure of the host–guest peptide, (Pro–Pro–Gly)~4~–(Pro–alloHyp–Gly)–(Pro–Pro–Gly)~4~, was analyzed at high resolution. allohydroxyproline (alloHyp), 4S‐hydroxyproline, was successfully characterized through the use of a host–guest peptide, while the previous study indicated the inability of a triple helical formation of (Pro–alloHyp–Gly)~10~. A detailed analysis of alloHyp conformation in collagen‐like models sheds light on the role played by its puckering in the triple‐helix stabilization and destabilization. That is, the alloHyp typically adopts down puckering. However, it adopted up puckering in the Y position in the Pro–alloHyp–Gly guest triplet, which was not preferable conformation for alloHyp. Therefore, the energetically unfavorable conformations seemed to play the key role in giving destabilization to the triple helix in (Pro–alloHyp–Gly)~10~. The intrinsic hydration pattern in (Pro–Pro–Gly)~9~ was conserved even in the surrounding alloHyp residues. © 2005 Wiley Periodicals, Inc. Biopolymers 81: 225–233, 2006

This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at [email protected]


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Conformational analysis of polytripeptid
✍ V. G. Tumanyan; R. A. Abagyan; N. G. Esipova 📂 Article 📅 1984 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 665 KB

## Synopsis Conformational analysis of triple helices of a type of collagen was performed with typical collagen tripeptide sequences based on Gly-Pro-Ala, Gly-Ala-Hyp, and Gly-Ala-Ala. During energy minimization, the possibility of continual deformation of the pyrrolidine cycle was taken into acco