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Computations of Standard Binding Free Energies with Molecular Dynamics Simulations

✍ Scribed by Deng, Yuqing; Roux, Benoît


Book ID
111885871
Publisher
American Chemical Society
Year
2009
Tongue
English
Weight
512 KB
Volume
113
Category
Article
ISSN
0022-3654

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A recently developed method for predicting binding affinities in ligand᎐receptor complexes, based on interaction energy averaging and conformational sampling by molecular dynamics simulation, is presented. Polar and nonpolar contributions to the binding free energy are approximated by a linear scali