Computational Methods in Molecular Biology

✍ Scribed by Steven L. Salzberg, David B. Searls and Simon Kasif (Eds.)

Publisher: Elsevier
Year: 1998
Tongue: English
Leaves: 366
Series: New Comprehensive Biochemistry 32
Category: Library

No coin nor oath required. For personal study only.

✦ Table of Contents

Content:
Edited by
Pages ii-iii

Copyright page
Page iv

Preface
Pages vii-ix
Steven Salzberg, David Searls, Simon Kasif

List of contributors
Pages xi-xiii

Other volumes in the series
Pages xxv-xxvi

Chapter 1 Grand challenges in computational biology Original Research Article
Pages 3-10
David B. Searls

Chapter 2 A tutorial introduction to computation for biologists Original Research Article
Pages 11-27
StevenL. Salzberg

Chapter 3 An introduction to biological sequence analysis Original Research Article
Pages 29-42
KennethH. Fasman, StevenL. Salzberg

Chapter 4 An introduction to hidden Markov models for biological sequences Original Research Article
Pages 45-63
Anders Krogh

Chapter 5 Case-based reasoning driven gene annotation Original Research Article
Pages 65-86
G.Christian Overton, Juergen Haas

Chapter 6 Classification-based molecular sequence analysis Original Research Article
Pages 87-107
David J. States, William C. Reisdorf Jr.

Chapter 7 Computational gene prediction using neural networks and similarity search Original Research Article
Pages 109-128
Ying Xu, EdwardC. Uberbacher

Chapter 8 Modeling dependencies in pre-mRNA splicing signals Original Research Article
Pages 129-164
ChristopherB. Burge

Chapter 9 Evolutionary approaches to computational biology Original Research Article
Pages 165-186
Rebecca J. Parsons

Chapter 10 Decision trees and Markov chains for gene finding Original Research Article
Pages 187-203
Steven L. Salzberg

Chapter 11 Statistical analysis of protein structures: Using environmental features for multiple purposes Original Research Article
Pages 207-225
Liping Wei, JeffreyT. Chang, RussB. Altman

Chapter 12 Analysis and algorithms for protein sequence-structure alignment Original Research Article
Pages 227-283
RichardH. Lathrop, Robert G. Rogers Jr., Jadwiga Bienkowska, BarbaraK.M. Bryant, LjubomirJ. Buturović, Chrysanthe Gaitatzes, Raman Nambudripad, James V White, TempleF. Smith

Chapter 13 THREADER: protein sequence threading by double dynamic programming Original Research Article
Pages 285-311
David Jones

Chapter 14 From computer vision to protein structure and association Original Research Article
Pages 313-334
HaimJ. Wolfson, Ruth Nussinov

Chapter 15 Modeling biological data and structure with probabilistic networks Original Research Article
Pages 335-352
Simon Kasif, Arthur L. Delcher

Appendix A
Pages 355-360

Appendix B
Pages 361-365

Subject Index
Pages 367-371

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