We aimed to provide a theoretical framework for dynamic studies of competition between fungi living on divided and ephemeral resources. We previously adapted the seminal Skellam's patch-occupancy model (Skellam, 1951) to describe the population dynamics of one species of unit-restricted fungus whose mycelial growth occurs within resource units and which colonizes new resource units by spore dispersal (Gourbiere et al., 1999). In this study, we extended this model to describe the competition between a pair of unit-restricted fungal species that interact with each other inside units by decreasing their spore production. Accordingly, we designed a discrete-time metapopulation model where all patches go extinct at each generation and species interact by lowering their propagule production in jointly occupied patches. We showed that the two species easily coexist although there is no trade-off between their competitive and colonization abilities. Furthermore, the outcome of the competition process can depend on a founder effect. Founder effect determines either which species is excluded or the relative densities of each species when they coexist. We investigated the implications of these results on the distribution and abundance of fungal species along environmental gradients. This work bridges the gap between the mycological theory of "Resource Units" and the metapopulation theory, showing the specificity of fungal exploitation competition. We suggest that unit-restricted fungal species are appropriate biological models to test the theoretical results of the metapopulation theory, such as the appearance of alternative stable equilibria.