The recent development of approximate analytical formulations of continuum electrostatics opens the possibility of efficient and accurate implicit Ε½ solvent models for biomolecular simulations. One such formulation ACE, .
Comment on the validation of continuum electrostatics models
β Scribed by Scarsi, Marco; Caflisch, Amedeo
- Publisher
- John Wiley and Sons
- Year
- 1999
- Tongue
- English
- Weight
- 144 KB
- Volume
- 20
- Category
- Article
- ISSN
- 0192-8651
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β¦ Synopsis
A validation based on solvation energies (vacuum to water transfer) is not sufficient to justify the use of approximated models of electrostatics to rank ligand/protein complexes. A full validation should be based on energies in solution, i.e., solvation plus vacuum Coulomb energies, because of the anticorrelation between solvation and vacuum energies. The energy in solution is the relevant quantity in simulations of biological macromolecules and complexes.
π SIMILAR VOLUMES
A boundary element formulation of continuum electrostatics is used to examine time-independent dielectric relaxation and screening in two proteins, and time-dependent relaxation in two simpler solutes. Cytochrome c oxidation is modeled by inserting partial charges on the heme, using one to three die