𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Bringing about matrix sparsity in linear-scaling electronic structure calculations

✍ Scribed by Emanuel H. Rubensson; Elias Rudberg


Publisher
John Wiley and Sons
Year
2011
Tongue
English
Weight
790 KB
Volume
32
Category
Article
ISSN
0192-8651

No coin nor oath required. For personal study only.

✦ Synopsis


The performance of linear-scaling electronic structure calculations depends critically on matrix sparsity. This article gives an overview of different strategies for removal of small matrix elements, with emphasis on schemes that allow for rigorous control of errors. In particular, a novel scheme is proposed that has significantly smaller computational overhead compared with the Euclidean norm-based truncation scheme of Rubensson et al. (J Comput Chem 2009, 30, 974) while still achieving the desired asymptotic behavior required for linear scaling. Small matrix elements are removed while ensuring that the Euclidean norm of the error matrix stays below a desired value, so that the resulting error in the occupied subspace can be controlled. The efficiency of the new scheme is investigated in benchmark calculations for water clusters including up to 6523 water molecules. Furthermore, the foundation of matrix sparsity is investigated. This includes a study of the decay of matrix element magnitude with distance between basis function centers for different molecular systems and different methods. The studied methods include Hartree-Fock and density functional theory using both pure and hybrid functionals. The relation between band gap and decay properties of the density matrix is also discussed.


📜 SIMILAR VOLUMES


Systematic sparse matrix error control f
✍ Emanuel H. Rubensson; Paweł Sałek 📂 Article 📅 2005 🏛 John Wiley and Sons 🌐 English ⚖ 312 KB

## Abstract Efficient truncation criteria used in multiatom blocked sparse matrix operations for __ab initio__ calculations are proposed. As system size increases, so does the need to stay on top of errors and still achieve high performance. A variant of a blocked sparse matrix algebra to achieve s

Sparse matrix multiplications for linear
✍ Chandra Saravanan; Yihan Shao; Roi Baer; Philip N. Ross; Martin Head–Gordon 📂 Article 📅 2003 🏛 John Wiley and Sons 🌐 English ⚖ 92 KB

## Abstract A sparse matrix multiplication scheme with multiatom blocks is reported, a tool that can be very useful for developing linear‐scaling methods with atom‐centered basis functions. Compared to conventional element‐by‐element sparse matrix multiplication schemes, __efficiency is gained__ by