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Boundaries of the universal K3 region and plateau region of the dynamic structure factor for DNA

✍ Scribed by J. Michael Schurr


Publisher
Wiley (John Wiley & Sons)
Year
1983
Tongue
English
Weight
681 KB
Volume
22
Category
Article
ISSN
0006-3525

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✦ Synopsis


A sufficiently long semiflexible filamentous macromolecule is theoretically expected to exhibit three different domains of behavior of its apparent diffusion coefficient D,,,(K) as a function of scattering vector K : (1) the small wave vector limit, where D,,,(K) = DO is the translational diffusion coefficient of the center-of-mass; (2) the universal K 3 region, where D,,,(K) = (h,3?'/67r7)K is a universal function of K independent of any property of the molecule itself; (c) the plateau region a t large K 2 , where D,,,(K) approaches either a plateau, or gradually sloping quasiplateau, characteristic of local (elastic) rigid-body motions of the filament. The existence of each of these different domains has now been established experimentally for at least some polymers. The boundaries of the universal K3 region and the plateau region are determined theoretically here using precise quantitative criteria for universal or plateau behavior of D,,,(K) for a Rouse-Zimm model containing N + 1 subchains with rms subchain extension b. Allowing a maximum of 13% nonuniversal behavior, the domain of the universal K 3 region is given by K2R& = K2Nb2/6 2 7 and K2b2 I 0.54. Allowing as much as 10% nonplateau behavior, the boundary for onset of plateau behavior is K2b2 = 18.3. D,,,(K) is a t least 50% nonuniversal when K2b2/6 = 6 In 3. Extension of these results to DNA is examined theoretically, and good agreement of the pertinent predictions with published experimental data is demonstrated.

It is concluded that no truly universal K 3 region exists for DNA with M, I lo7 and persistence length a 2 450 A, although marginally (117% nonuniversal) universal behavior, is exhibited in a very narrow domain 0.64 X 1010 1 K 2 I 0.84 X 1O1O cm-2 for 429 DNA (M, = 11.5 X lo6). More than 5070 of Dapp(K) is governed by local (elastic) rigid-body motions when K 2 = 5.23 X 1O'O cm-2. The existence of a very wide region of nonuniversal apparent K 3 behavior extending up to very large K2, far into the plateau region, is demonstrated in a plot of D,,,(K)/K vs K 2 for the Rouse-Zimm model. This is shown to stem in part from visual artifacts of plotting D,,,(K)/K vs K 2 , even for rigid species.


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