𝔖 Bobbio Scriptorium
✦   LIBER   ✦

Analysis of knowledge-based protein-ligand potentials using a self-consistent method

✍ Scribed by J. Shimada; A.V. Ishchenko; E.I. Shakhnovich


Book ID
111753785
Publisher
Cold Spring Harbor Laboratory Press
Year
2008
Tongue
English
Weight
382 KB
Volume
9
Category
Article
ISSN
0961-8368

No coin nor oath required. For personal study only.


📜 SIMILAR VOLUMES


Consistent refinement of submitted model
✍ Gaurav Chopra; Nir Kalisman; Michael Levitt 📂 Article 📅 2010 🏛 John Wiley and Sons 🌐 English ⚖ 795 KB

## Abstract Protein structure refinement is an important but unsolved problem; it must be solved if we are to predict biological function that is very sensitive to structural details. Specifically, critical assessment of techniques for protein structure prediction (CASP) shows that the accuracy of

Evaluation of a knowledge-based potentia
✍ Irene Nobeli; John B. O. Mitchell; Alexander Alex; Janet M. Thornton 📂 Article 📅 2001 🏛 John Wiley and Sons 🌐 English ⚖ 323 KB 👁 1 views

## Abstract The Biomolecular Ligand Energy Evaluation Protocol (BLEEP) is a knowledge‐based potential derived from high‐resolution X‐ray structures of protein–ligand complexes. The performance of this potential in ranking the hypothetical structures resulting from a docking study has been evaluated

Improvement of side-chain modeling in pr
✍ Joaquim Mendes; Cláudio M. Soares; Maria Arménia Carrondo 📂 Article 📅 1999 🏛 Wiley (John Wiley & Sons) 🌐 English ⚖ 366 KB 👁 3 views

With the objective of improving side-chain conformation prediction, we have analyzed the influence of various factors on prediction by the Self-Consistent Mean Field Theory method, applied to a set of high resolution x-ray protein structure models. These factors may be classed as variations in the m