An improved algorithm and its parallel implementation for solving a general blood-tissue transport and metabolism model
✍ Scribed by Dexuan Xie; Ranjan K. Dash; Daniel A. Beard
- Publisher
- Elsevier Science
- Year
- 2009
- Tongue
- English
- Weight
- 579 KB
- Volume
- 228
- Category
- Article
- ISSN
- 0021-9991
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✦ Synopsis
Fast algorithms for simulating mathematical models of coupled blood-tissue transport and metabolism are critical for the analysis of data on transport and reaction in tissues. Here, by combining the method of characteristics with the standard grid discretization technique, a novel algorithm is introduced for solving a general blood-tissue transport and metabolism model governed by a large system of one-dimensional semilinear first order partial differential equations. The key part of the algorithm is to approximate the model as a group of independent ordinary differential equation (ODE) systems such that each ODE system has the same size as the model and can be integrated independently. Thus the method can be easily implemented in parallel on a large scale multiprocessor computer. The accuracy of the algorithm is demonstrated for solving a simple blood-tissue exchange model introduced by Sangren and Sheppard (Bull. Math. Biophys. 15:387-394, 1953), which has an analytical solution. Numerical experiments made on a distributed-memory parallel computer (an HP Linux cluster) and a shared-memory parallel computer (a SGI Origin 2000) demonstrate the parallel efficiency of the algorithm.