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An evolution of minimalist models for protein folding: from the behavior of protein-like polymers to protein function

✍ Scribed by John Karanicolas; Charles L. Brooks III

Book ID
117803056
Publisher
Elsevier Science
Year
2004
Tongue
English
Weight
251 KB
Volume
2
Category
Article
ISSN
1741-8364

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The partition function of the two-dimensional lattice HP model for protein folding is computed by exact enumeration. For a protein-like sequence, the distribution of partiton function zeros shows roughly a two-ring pattern, while for a nonprotein-like sequence, the outer ring of zeros is ill-develop

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## Abstract In this study, free‐energy function (FEF) for discriminating the native fold of a protein from misfolded decoys was investigated. It is a physics‐based function using an all‐atom model, which comprises the hydration entropy (HE) and the total dehydration penalty (TDP). The HE is calcula