Activation energies by molecular dynamics with constraints

✍ Scribed by Emanuele Paci; Giovanni Ciccotti; Mauro Ferrario; Raymond Kapral

• Publisher: Elsevier Science
• Year: 1991
• Tongue: English
• Weight: 523 KB
• Volume: 176
• Category: Article
• ISSN: 0009-2614
• DOI: 10.1016/0009-2614(91)90259-c

✦ Synopsis

Recently Tobias and Broods introduced a method to compute by molecular dynamics with constraints the probability density P(r) = (&r-7)) associated with rate values i of a spatial coordinate r. In this Letter we extend their approach to the case of a general reaction coordinate C(r), an arbitrary function of the configuration-space coordinates. The generalized version is shown to be the integral form of the free energy calculation in the constrained-reaction-coordinate ensemble where the mean force is computed as an average in a t;-constrained ensemble. The two approaches are shown to be of equal computational efficiency for a very simple Lennard-Jones test case.