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Accelerating large-scale protein structure alignments with graphics processing units

โœ Scribed by Bin Pang; Nan Zhao; Michela Becchi; Dmitry Korkin; Chi-Ren Shyu


Book ID
115025200
Publisher
BioMed Central
Year
2012
Tongue
English
Weight
570 KB
Volume
5
Category
Article
ISSN
1756-0500

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Sequence alignment programs such as BLAST and PSI-BLAST are used routinely in pairwise, profile-based, or intermediate-sequencesearch (ISS) methods to detect remote homologies for the purposes of fold assignment and comparative modeling. Yet, the sequence alignment quality of these methods at low se