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A theoretical study on the hydration of B- and Z-DNA double helices

✍ Scribed by Mee Young Song; Seungmoak Kim; Mu Shik Jhon


Book ID
119117042
Publisher
Elsevier Science
Year
1988
Tongue
English
Weight
657 KB
Volume
179
Category
Article
ISSN
0166-1280

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## Abstract Dielectric relaxation peak due to bound water was found around 100 MHz in poly(dG‐dC) Β· poly(dG‐dC) and calf thymus DNA in water–ethanol mixtures with NaCl buffer. Relaxation time and strength show a transition for poly(dG‐dC) Β· poly(dG‐dC) at anethanol composition __C__~w~ = 0.45 (w/w)

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The molecular dynamics simulations reported earlier for the structure and dynamics of water molecules hydrating B-and Z-DNA double helices are analyzed for the orientational correlation functions and the proton rotational velocity autocorrelation functions. The spectra of the rotational velocity aut

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Using an iterative approach, we have placed monovalent ("solvated") and divalent (both solvated and " unsolvated") ions around a 20 base pair sequence, (dC-dG),,, in standard B and ZI conformations. The molecule with its attendant ions in the various conformations is subjected to energy minimization