๐”– Bobbio Scriptorium
โœฆ   LIBER   โœฆ

A simple method for predicting electron density in complex flexible molecules. A tribute to F.L. Hirshfeld

โœ Scribed by Pierre J. Becker; Emmanuel Bec


Publisher
Elsevier Science
Year
1996
Tongue
English
Weight
477 KB
Volume
260
Category
Article
ISSN
0009-2614

No coin nor oath required. For personal study only.

โœฆ Synopsis


A simple method is introduced to decompose the electronic density of a molecule into the sum of fragments. The method is based on Hirshfeld's partitioning scheme. For flexible molecules, one can verify that the density of the fragments around a single bond is invariant to an accuracy better than 0.05 e,~-3. The method has been checked for alkanes, acetone, urea, water dimers, alanine and glycylglycine. The invariance of the density of fragments on each side of the peptide bond is well fulfilled. Moreover, it turns out that some fragment densities can be transferred from one molecule to a bigger one within the same limit of accuracy. This allows for the possibility of predicting the electron density of a complex molecule that cannot be calculated by quantum mechanical methods. The method is compared with Mulliken's partitioning used in similar studies by Mezey. The two methods lead to similar conclusions for various conformations of a given molecule. However, transferability, which is the key for efficient use of such schemes, is significantly better with our approach.


๐Ÿ“œ SIMILAR VOLUMES


A rapid method for positioning small fle
โœ David J. Diller; Ehmke Pohl; Matthew R. Redinbo; Bianca T. Hovey; Wim G.J. Hol ๐Ÿ“‚ Article ๐Ÿ“… 1999 ๐Ÿ› John Wiley and Sons ๐ŸŒ English โš– 602 KB

A Monte Carlo procedure, encoded in the program Blob, has been developed and tested for the purpose of positioning large molecular fragments or small flexible molecules in electron density maps. The search performed by the algorithm appears to be sufficiently thorough to accurately position a small