𝔖 Bobbio Scriptorium
✦   LIBER   ✦

A parallel distributed data CPHF algorithm for analytic Hessians

✍ Scribed by Yuri Alexeev; Michael W. Schmidt; Theresa L. Windus; Mark S. Gordon


Publisher
John Wiley and Sons
Year
2007
Tongue
English
Weight
185 KB
Volume
28
Category
Article
ISSN
0192-8651

No coin nor oath required. For personal study only.

✦ Synopsis


Abstract

One of the most commonly used means to characterize potential energy surfaces of reactions and chemical systems is the Hessian calculation, whose analytic evaluation is computationally and memory demanding. A new scalable distributed data analytic Hessian algorithm is presented. Features of the distributed data parallel coupled perturbed Hartree‐Fock (CPHF) are (a) columns of density‐like and Fock‐like matrices are distributed among processors, (b) an efficient static load balancing scheme achieves good work load distribution among the processors, (c) network communication time is minimized, and (d) numerous performance improvements in analytic Hessian steps are made. As a result, the new code has good performance which is demonstrated on large biological systems. Β© 2007 Wiley Periodicals, Inc. J Comput Chem, 2007


πŸ“œ SIMILAR VOLUMES


Parallel implementation of a ray tracing
✍ Lee, Tong-Yee; Raghavendra, C. S.; Nicholas, John B. πŸ“‚ Article πŸ“… 1997 πŸ› John Wiley and Sons 🌐 English βš– 145 KB πŸ‘ 3 views

Ray tracing is a well known technique to generate life-like images. Unfortunately, ray tracing complex scenes can require large amounts of CPU time and memory storage. Distributed memory parallel computers with large memory capacities and high processing speeds are ideal candidates to perform ray tr

A novel parallel algorithm for large-sca
✍ Hajime Takashima; So Yamada; Shigeru Obara; Kunihiro Kitamura; Shinjiro Inabata; πŸ“‚ Article πŸ“… 2002 πŸ› John Wiley and Sons 🌐 English βš– 186 KB πŸ‘ 1 views

## Abstract We developed a novel parallel algorithm for large‐scale Fock matrix calculation with small locally distributed memory architectures, and named it the β€œ__RT__ parallel algorithm.” The __RT__ parallel algorithm actively involves the concept of integral screening, which is indispensable fo

Development of a multipopulation paralle
✍ Scott Habershon; Kenneth D. M. Harris; Roy L. Johnston πŸ“‚ Article πŸ“… 2003 πŸ› John Wiley and Sons 🌐 English βš– 186 KB

## Abstract Previously, the genetic algorithm (GA) approach for direct‐space crystal structure solution from powder diffraction data has been applied successfully in the structure determination of a range of organic molecular materials. In this article, we present a further development of our appro

Determining the Execution Time Distribut
✍ Yan Alexander Li; John K. Antonio; Howard Jay Siegel; Min Tan; Daniel W. Watson πŸ“‚ Article πŸ“… 1997 πŸ› Elsevier Science 🌐 English βš– 278 KB

An important problem in heterogeneous computing (HC) is predicting task execution time. A methodology is introduced for determining the execution time distribution for a given data parallel program that is to be executed in an SIMD, MIMD (SPMD), and/or mixed-mode SIMD/MIMD (SPMD) HC environment. The